Published January 29, 2018
| Version 2.1.0
Dataset
Open
Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"
- 1. Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia
Description
De novo genome assemblies of
- Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
- Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)
- Worm_PB (C. elegans,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)
- Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)
- Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)
- Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopores)
Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information and other human datasets assemblies please visit http://cab.spbu.ru/software/quast-lg/ or write to quast.support@cab.spbu.ru.
Files
Files
(2.3 GB)
Name | Size | Download all |
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md5:45b31b89364cafdf340007ab7b7fe990
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283.5 MB | Download |
md5:027085eb699e84e1b3a8261db03dfd04
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931.6 MB | Download |
md5:e9d666d774b255595ad55d37e518c78a
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872.3 MB | Download |
md5:aac9190414276d36d9bf2351ed9c9b63
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152.5 MB | Download |
md5:525a0db643d620ba7e87040ce38ca926
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15.0 MB | Download |
md5:9da1651104527dc7e2a6de34722506fe
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18.7 MB | Download |