Alla Mikheenko
Andrey Prjibelski
Vladislav Saveliev
Dmitry Antipov
Alexey Gurevich
2018-01-29
<p><em>De novo</em> genome assemblies of</p>
<ol>
<li>Yeast_PB (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)</li>
<li>Yeast_NP (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, Flye, MaSuRCA (from Illumina pair-ends and Oxford Nanopores)</li>
<li>Worm_PB (<em>C. elegans</em>,genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA (from Illumina pair-ends and PacBio SMRT)</li>
<li>Fly_MP (<em>D. melanogaster</em>, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)</li>
<li>Human_MP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)</li>
<li>Human_NP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopores)</li>
</ol>
<p>Each pack is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information and other human datasets assemblies please visit http://cab.spbu.ru/software/quast-lg/ or write to <em>quast.support@cab.spbu.ru.</em></p>
https://doi.org/10.5281/zenodo.1163382
oai:zenodo.org:1163382
eng
Zenodo
https://doi.org/10.5281/zenodo.1050295
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
genome assembly, genome assembly evaluation
Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"
info:eu-repo/semantics/other