1208078
doi
10.5281/zenodo.1208078
oai:zenodo.org:1208078
Br soaked lysozyme datasets collected with the mixed scheme implemented in HITO in the ZOO system
Kunio Hirata
RIKEN/SPring-8 Center
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
<p>Bromide soaked lysozyme crystals were used as standard crystals for evaluation of the automated data collection, ZOO, developed at SPring-8 BL32XU.</p>
<p>Crystals those sizes ranged 10-100 µm were cryocooled together in the same cryoloop and processed 'mixed scheme' implemented in the ZOO system.</p>
<p>Beam size : 10(H) x 15(V) µm<sup>2</sup></p>
<p>After 2D raster scanning the loop, HITO detects 1 crystals for full rotation helical, 7 crystals for partial helical, and 62 crystals for multiple small wedge schemes, respectively. A full rotation helical, partial helical and small wedge datasets contain total oscillation of 60 deg, 40 deg and 5 deg. respectively. </p>
<p>The crystals belong to space group P4<sub>3</sub>2<sub>1</sub>2 with mean unit cell parameters a=b=79.1, c=37.5.</p>
<p>Data was processed up to 1.50 Å resolution in the published result (Hirata et al. in preparation) using KAMO.</p>
<p><em><strong><Available data></strong></em></p>
<ul>
<li># Beamline: SPring-8 BL32XU</li>
<li># wavelength 0.9000 A</li>
<li># Detector : EIGER X 9M</li>
<li># ZOO mode: mixed scheme (HITO)</li>
<li>#####################################################</li>
<li># Multiple small wedge datasets</li>
<li># 'CPS1991-05-multi_master.h5' manages 62 datasets</li>
<li>#####################################################</li>
<li># 5.0 deg. / datasets</li>
<li># 0.1 deg. / frame</li>
<li># 50 frames / datasets</li>
<li># 100 frames in each data file</li>
<li>#####################################################</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000001.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000002.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000003.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000004.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000005.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000006.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000007.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000008.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000009.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000010.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000011.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000012.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000013.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000014.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000015.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000016.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000017.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000018.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000019.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000020.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000021.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000022.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000023.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000024.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000025.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000026.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000027.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000028.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000029.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000030.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_data_000031.h5</li>
<li>hito-CPS1991-05//data/CPS1991-05-multi_master.h5</li>
</ul>
<p> </p>
<ul>
<li>#####################################################</li>
<li># 'cry-00-??_master.h5' are for 'partial helical' datasets</li>
<li>#####################################################</li>
<li># 40.0 deg. / datasets</li>
<li># 0.1 deg. / frame</li>
<li># 400 frames / datasets</li>
<li># 100 frames in each data file</li>
<li>#####################################################</li>
<li>hito-CPS1991-05//data/cry-00-00_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-00_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-00_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-00_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-00_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-01_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-01_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-01_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-01_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-01_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-02_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-02_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-02_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-02_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-02_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-03_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-03_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-03_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-03_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-03_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-04_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-04_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-04_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-04_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-04_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-05_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-05_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-05_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-05_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-05_master.h5</li>
<li>hito-CPS1991-05//data/cry-00-06_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-00-06_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-00-06_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-00-06_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-00-06_master.h5</li>
</ul>
<p> </p>
<ul>
<li>#####################################################</li>
<li># 'cry-01-??_master.h5' are for 'full rotation helical' datasets</li>
<li>#####################################################</li>
<li># 60.0 deg. / datasets</li>
<li># 0.1 deg. / frame</li>
<li># 600 frames / datasets</li>
<li># 100 frames in each data file</li>
<li># ** The program could collect 'full rotation' helical dataset</li>
<li># but 60 deg. was set for this demonstration.</li>
<li>#####################################################</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000001.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000002.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000003.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000004.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000005.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_data_000006.h5</li>
<li>hito-CPS1991-05//data/cry-01-00_master.h5</li>
</ul>
Zenodo
2018-12-18
info:eu-repo/semantics/other
1208077
1579893959.962459
40654331336
md5:d237f22cd25fe3ca8723c670394ee1a3
https://zenodo.org/records/1208078/files/hito-CPS1991-05.tgz
public
10.5281/zenodo.1208077
isVersionOf
doi