Dataset Open Access

AnnoTree: Functionally Annotated Tree of Life

Mendler, Kerrin; Doxey, Andrew; Chen, Han


JSON-LD (schema.org) Export

{
  "description": "<p><strong>Current version:</strong><br>\n2019-02-01: This file is a MySQL (v5.7) dump&nbsp;for AnnoTree, a functionally annotated tree of life.&nbsp;It includes the databases &#39;gtdb_bacteria_RS86&#39; and &#39;gtdb_archaea_RS86&#39;. Both databases include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27), <a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018), and <a href=\"http://tigrfams.jcvi.org/cgi-bin/index.cgi\">TIGRFAM</a>&nbsp;(v15) annotations for the representative genomes in <a href=\"http://gtdb.ecogenomic.org/\">GTDB</a> release 03-RS86.</p>\n\n<p>Please refer to <a href=\"http://annotree.uwaterloo.ca\">http://annotree.uwaterloo.ca</a> for the full site.</p>\n\n<p>&nbsp;</p>\n\n<p><strong>Older versions:</strong><br>\n2018-10-22: MySQL dump file (v5.7)&nbsp;containing the &#39;gtdb_bacteria&#39; database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include <a href=\"https://pfam.xfam.org/\">Pfam</a>&nbsp;(v27) and&nbsp;<a href=\"https://www.genome.jp/kegg/\">KEGG</a> Ontology (from the <a href=\"https://www.uniprot.org/help/uniref\">UniRef100</a> database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.</p>", 
  "license": "http://creativecommons.org/licenses/by-sa/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "University of Waterloo", 
      "@type": "Person", 
      "name": "Mendler, Kerrin"
    }, 
    {
      "affiliation": "University of Waterloo", 
      "@type": "Person", 
      "name": "Doxey, Andrew"
    }, 
    {
      "affiliation": "University of Waterloo", 
      "@type": "Person", 
      "name": "Chen, Han"
    }
  ], 
  "url": "https://zenodo.org/record/2555457", 
  "datePublished": "2018-10-22", 
  "version": "1.1.0", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://www.zenodo.org/api/files/0a603c4d-ca98-4e6f-a38e-930567985d67/annotree-db-backup-2019-02-01.sql.tar.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }, 
    {
      "contentUrl": "https://www.zenodo.org/api/files/0a603c4d-ca98-4e6f-a38e-930567985d67/gtdb_bacteria-db-backup-2018-10-22.sql.tar.gz", 
      "@type": "DataDownload", 
      "fileFormat": "gz"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.2555457", 
  "@id": "https://doi.org/10.5281/zenodo.2555457", 
  "@type": "Dataset", 
  "name": "AnnoTree: Functionally Annotated Tree of Life"
}
434
103
views
downloads
All versions This version
Views 434301
Downloads 10349
Data volume 2.0 TB1.0 TB
Unique views 338254
Unique downloads 8437

Share

Cite as