Mendler, Kerrin
Doxey, Andrew
Chen, Han
2018-10-22
<p><strong>Current version:</strong><br>
2019-02-01: This file is a MySQL (v5.7) dump for AnnoTree, a functionally annotated tree of life. It includes the databases 'gtdb_bacteria_RS86' and 'gtdb_archaea_RS86'. Both databases include <a href="https://pfam.xfam.org/">Pfam</a> (v27), <a href="https://www.genome.jp/kegg/">KEGG</a> Ontology (from the <a href="https://www.uniprot.org/help/uniref">UniRef100</a> database downloaded March 6, 2018), and <a href="http://tigrfams.jcvi.org/cgi-bin/index.cgi">TIGRFAM</a> (v15) annotations for the representative genomes in <a href="http://gtdb.ecogenomic.org/">GTDB</a> release 03-RS86.</p>
<p>Please refer to <a href="http://annotree.uwaterloo.ca">http://annotree.uwaterloo.ca</a> for the full site.</p>
<p> </p>
<p><strong>Older versions:</strong><br>
2018-10-22: MySQL dump file (v5.7) containing the 'gtdb_bacteria' database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include <a href="https://pfam.xfam.org/">Pfam</a> (v27) and <a href="https://www.genome.jp/kegg/">KEGG</a> Ontology (from the <a href="https://www.uniprot.org/help/uniref">UniRef100</a> database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.</p>
https://doi.org/10.5281/zenodo.2555457
oai:zenodo.org:2555457
Zenodo
https://doi.org/10.5281/zenodo.1468868
info:eu-repo/semantics/openAccess
Creative Commons Attribution Share Alike 4.0 International
https://creativecommons.org/licenses/by-sa/4.0/legalcode
AnnoTree: Functionally Annotated Tree of Life
info:eu-repo/semantics/other