ExcitedStates/qfit-3.0: v3.2.1

Release v3.2.1

• Update README.md for new refinement script/input by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/120
• Improve flags (& --help) of qfit programs by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/122
• Add --random-seed to provide option for reproducible runs by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/124
• Add --rmsd-cutoff option to qFit-ligand by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/126
• Update setup-miniconda GitHub Action (repairs failing CI) by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/129
• Fixing CI Testing function by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/137
• Changing write-intermediate-conformers argument to match qfit_protein by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/127
• Add Ca option in b-factor.py script by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/131
• Added cryo-EM and qFit ligand examples by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/125
• Fix CI, installs failing caused by numpy API change by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/148
• adding new post qfit analysis scripts by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/146
• correcting line for post qFit refine cryoEM by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/152
• Fixup indentation in alpha_rmsd by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/155
• adding qfit_protein for scale/cryst by @stephaniewankowicz in https://github.com/ExcitedStates/qfit-3.0/pull/151
• Move to python 3.7, 3.8 by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/156
• Remove licences, update citation by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/157
• Release bugfix version: 3.2.1 by @blake-riley in https://github.com/ExcitedStates/qfit-3.0/pull/158

Full Changelog: https://github.com/ExcitedStates/qfit-3.0/compare/v3.2.0...v3.2.1