Planned intervention: On Thursday March 28th 07:00 UTC Zenodo will be unavailable for up to 5 minutes to perform a database upgrade.
Published January 23, 2023 | Version 110
Dataset Open

BIP4COVID19: Impact metrics and indicators for coronavirus related publications

Description

This dataset contains impact metrics and indicators for a set of publications that are related to the COVID-19 infectious disease and the coronavirus that causes it. It is based on:

  1. Τhe CORD-19 dataset released by the team of Semantic Scholar1 and
  2. Τhe curated data provided by the LitCovid hub2.

These data have been cleaned and integrated with data from COVID-19-TweetIDs and from other sources (e.g., PMC). The result was dataset of 628,506 unique articles along with relevant metadata (e.g., the underlying citation network). We utilized this dataset to produce, for each article, the values of the following impact measures:

  • Influence: Citation-based measure reflecting the total impact of an article. This is based on the PageRank3 network analysis method. In the context of citation networks, it estimates the importance of each article based on its centrality in the whole network. This measure was calculated using the PaperRanking (https://github.com/diwis/PaperRanking) library4.
  • Influence_alt: Citation-based measure reflecting the total impact of an article. This is the Citation Count of each article, calculated based on the citation network between the articles contained in the BIP4COVID19 dataset.
  • Popularity: Citation-based measure reflecting the current impact of an article. This is based on the AttRank5 citation network analysis method. Methods like PageRank are biased against recently published articles (new articles need time to receive their first citations). AttRank alleviates this problem incorporating an attention-based mechanism, akin to a time-restricted version of preferential attachment, to explicitly capture a researcher's preference to read papers which received a lot of attention recently. This is why it is more suitable to capture the current "hype" of an article.
  • Popularity alternative: An alternative citation-based measure reflecting the current impact of an article (this was the basic popularity measured provided by BIP4COVID19 until version 26). This is based on the RAM6 citation network analysis method. Methods like PageRank are biased against recently published articles (new articles need time to receive their first citations). RAM alleviates this problem using an approach known as "time-awareness". This is why it is more suitable to capture the current "hype" of an article. This measure was calculated using the PaperRanking (https://github.com/diwis/PaperRanking) library4.
  • Social Media Attention: The number of tweets related to this article. Relevant data were collected from the COVID-19-TweetIDs dataset. In this version, tweets between 23/6/22-29/6/22 have been considered from the previous dataset.

We provide five CSV files, all containing the same information, however each having its entries ordered by a different impact measure. All CSV files are tab separated and have the same columns (PubMed_id, PMC_id, DOI, influence_score, popularity_alt_score, popularity score, influence_alt score, tweets count).

The work is based on the following publications:

  1. COVID-19 Open Research Dataset (CORD-19). 2020. Version 2023-01-10 Retrieved from https://pages.semanticscholar.org/coronavirus-research. Accessed 2023-01-10. doi:10.5281/zenodo.3715506
  2. Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 (version 2023-01-10)
  3. R. Motwani L. Page, S. Brin and T. Winograd. 1999. The PageRank Citation Ranking: Bringing Order to the Web. Technical Report. Stanford InfoLab.
  4. I. Kanellos, T. Vergoulis, D. Sacharidis, T. Dalamagas, Y. Vassiliou: Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation. TKDE 2019
  5. I. Kanellos, T. Vergoulis, D. Sacharidis, T. Dalamagas, Y. Vassiliou: Ranking Papers by their Short-Term Scientific Impact. CoRR abs/2006.00951 (2020)
  6. Rumi Ghosh, Tsung-Ting Kuo, Chun-Nan Hsu, Shou-De Lin, and Kristina Lerman. 2011. Time-Aware Ranking in Dynamic Citation Networks. In Data Mining Workshops (ICDMW). 373–380

A Web user interface that uses these data to facilitate the COVID-19 literature exploration, can be found here. More details in our peer-reviewed publication here (also here there is an outdated preprint version).

Funding: We acknowledge support of this work by the project "Moving from Big Data Management to Data Science" (MIS 5002437/3) which is implemented under the Action "Reinforcement of the Research and Innovation Infrastructure", funded by the Operational Programme "Competitiveness, Entrepreneurship and Innovation" (NSRF 2014-2020) and co-financed by Greece and the European Union (European Regional Development Fund).

Terms of use: These data are provided "as is", without any warranties of any kind. The data are provided under the Creative Commons Attribution 4.0 International license.

Notes

Please cite: Thanasis Vergoulis, Ilias Kanellos, Serafeim Chatzopoulos, Danae Pla Karidi, Theodore Dalamagas. "BIP4COVID19: Releasing impact measures for articles relevant to COVID-19". Quantitative Science Studies 2022-01-24; doi: https://doi.org/10.1162/qss_a_00169

Files

articles_by_influence.csv

Files (330.4 MB)

Name Size Download all
md5:60e1e1131a3b540a02a8c25583c14144
66.1 MB Preview Download
md5:41972c5bce0204df366fa10e227880c8
66.1 MB Preview Download
md5:529f9a9b1e657d0092a8b2f38578d81f
66.1 MB Preview Download
md5:e3e8a8d5b4ceb58f3aa1981ca26cedfb
66.1 MB Preview Download
md5:d85e568263841aa5ea694863d28e7b63
66.1 MB Preview Download

Additional details

References

  • COVID-19 Open Research Dataset (CORD-19). 2020. Version 2023-01-10. Retrieved from https://pages.semanticscholar.org/coronavirus-research. Accessed 2023-01-10
  • I. Kanellos, T. Vergoulis, D. Sacharidis, T. Dalamagas, Y. Vassiliou: Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation. TKDE 2019
  • I. Kanellos, T. Vergoulis, D. Sacharidis, T. Dalamagas, Y. Vassiliou: Ranking Papers by their Short-Term Scientific Impact. CoRR abs/2006.00951 (2020)
  • Rumi Ghosh, Tsung-Ting Kuo, Chun-Nan Hsu, Shou-De Lin, and Kristina Lerman. 2011. Time-Aware Ranking in Dynamic Citation Networks. In Data Mining Workshops (ICDMW). 373–380
  • R. Motwani L. Page, S. Brin and T. Winograd. 1999. The PageRank Citation Ranking: Bringing Order to the Web. Technical Report. Stanford InfoLab.
  • Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 (version 2023-01-10)