10.5281/zenodo.824551
https://zenodo.org/records/824551
oai:zenodo.org:824551
Benjamin Callahan
Benjamin Callahan
NC State University
Silva taxonomic training data formatted for DADA2 (Silva version 128)
Zenodo
2017
Silva, DADA2, taxonomy
2017-07-08
10.5281/zenodo.801831
Other (Non-Commercial)
These DADA2-formatted training fasta files were derived from the Silva Project's version 128 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/
These fastas were generated by the following commands (using the dada2 R package version 1.5.2):
path <- "~/Desktop/Silva/Silva.nr_v128"
dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")
dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")
Changes in Version 2: A typo in the genus name Escherichia was corrected.
These files are derived from the Silva database, and their use is subject to the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/