fileformat : { ‘psa’, ‘msa’, ‘msq’ }
Indicate which data should be written to file. Select between:
- ‘psa’ – output of all pairwise alignments in psa-format,
- ‘msa’ – output of the multiple alignment in msa-format, or
- ‘msq’ – output of the multiple sequences in msq-format.
filename : str
Select a specific name for the outfile, otherwise, the name of
the infile will be taken by default.
sorted_seqs : bool
Indicate whether the sequences should be sorted or not (applys only
to ‘msa’ and ‘msq’ output.
unique_seqs : bool
Indicate whether only unique sequences should be written to file or
not.
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