LingPy

This documentation is for version 2.0.dev, which is not released yet.

lingpy.align.pairwise.Pairwise

class lingpy.align.pairwise.Pairwise(seqs, seqB=False, **keywords)

Basic class for the handling of pairwise sequence alignments (PSA).

Parameters :

seqs : string list

Either the first string of a sequence pair that shall be aligned, or a list of sequence tuples.

seqB : string or bool (default=None)

Define the second sequence that shall be aligned with the first sequence, if only two sequences shall be compared.

Methods

align([gop, scale, mode, factor, ...]) Align a pair of sequences or multiple sequence pairs.

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