Base class for the evaluation of automatic pairwise sequence analyses.
Parameters : | gold, test : lingpy.compare.Pairwise
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See also
Notes
Moste of the scores which can be calculated with help of this class are standard evaluation scores in evolutionary biology. For a close description on how these scores are calculated, see, for example, Thompson1999, List2012, and Rosenberg2009b.
Methods
c_score() | Calculate column (C) score. |
diff([filename]) | Write all differences between two sets to a file. |
jc_score() | Calculate the Jaccard (JC) score. |
pir_score([mode]) | Compute the percentage of identical rows (PIR) score. |
sp_score() | Calculate the sum-of-pairs (SP) score. |