Base class for the evaluation of automatic multiple sequence analyses.
Parameters : | gold, test : Multiple
|
---|
See also
Notes
Moste of the scores which can be calculated with help of this class are standard evaluation scores in evolutionary biology. For a close description on how these scores are calculated, see, for example, Thompson1999, List2012, and :evobib:`Rosenberg2009b.
Methods
c_score([mode]) | Calculate the column (C) score. |
check_swaps() | Check for possibly identical swapped sites. |
jc_score() | Calculate the Jaccard (JC) score. |
pir_score() | Compute the percentage of identical rows (PIR) score. |
sp_score([mode]) | Calculate the sum-of-pairs (SP) score. |