LingPy

Cluster Algorithms (cluster)

This module provides functions for basic cluster algorithms.

Flat Cluster Algorithms

flat_upgma(matrix, threshold[, taxa]) Carry out a flat cluster analysis based on the UPGMA algorithm (Sokal1958).

Deep Cluster Algorithms

upgma(matrix, taxa[, distances]) Carry out a cluster analysis based on the UPGMA algorithm (Sokal1958).
neighbor(matrix, taxa[, distances]) Function clusters data according to the Neighbor-Joining algorithm (Saitou1987).

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