LingPy

Index

_ | A | C | D | E | F | G | I | J | L | M | N | O | P | S | T | U

_

__init__() (lingpy.algorithm.misc.LingpyArray method)
(lingpy.test.evaluate.EvalPSA method)

A

align() (lingpy.compare.Pairwise method)
alm2html() (in module lingpy.output.plot)
analyze() (lingpy.lexstat.LexStat method)
asjp (in module lingpy.data)

C

c_score() (lingpy.test.evaluate.EvalMSA method)
(lingpy.test.evaluate.EvalPSA method)
check_swaps() (lingpy.test.evaluate.EvalMSA method)
class2tokens() (in module lingpy.algorithm.misc)
compare_pairwise_decisions() (lingpy.test.evaluate.EvalLXS method)
compile_diacritics_and_vowels() (in module lingpy.data.derive)
compile_model() (in module lingpy.data.derive)

D

diff() (lingpy.test.evaluate.EvalPSA method)

E

EvalLXS (class in lingpy.test.evaluate)
EvalMSA (class in lingpy.test.evaluate)
EvalPSA (class in lingpy.test.evaluate)

F

flat_upgma() (in module lingpy.algorithm.cluster)

G

get_file() (in module lingpy.test.test)
get_pairwise_alignments() (lingpy.compare.Multiple method)
get_peaks() (lingpy.compare.Multiple method)
get_pid() (lingpy.compare.Multiple method)

I

ipa2cls() (lingpy.compare.Multiple method)
ipa2tokens() (in module lingpy.algorithm.misc)
ipa_diacritics (in module lingpy.data)
ipa_vowels (in module lingpy.data)
iterate_all_sequences() (lingpy.compare.Multiple method)
iterate_clusters() (lingpy.compare.Multiple method)
iterate_orphans() (lingpy.compare.Multiple method)
iterate_similar_gap_sites() (lingpy.compare.Multiple method)

J

jc_score() (lingpy.test.evaluate.EvalMSA method)
(lingpy.test.evaluate.EvalPSA method)

L

LexStat (class in lingpy.lexstat)
lib_align() (lingpy.compare.Multiple method)
lingpy.algorithm.cluster (module)
lingpy.algorithm.misc (module)
lingpy.data (module)
lingpy.data.derive (module)
lingpy.output.plot (module)
lingpy.test.evaluate (module)
lingpy.test.test (module)
LingpyArray (class in lingpy.algorithm.misc)
list_files() (in module lingpy.test.test)
loadtxt() (in module lingpy.algorithm.misc)

M

Model (class in lingpy.data.model)
msa2html() (in module lingpy.output.plot)
Multiple (class in lingpy.compare)

N

neighbor() (in module lingpy.algorithm.cluster)

O

output() (lingpy.compare.Multiple method)
(lingpy.compare.Pairwise method)
(lingpy.lexstat.LexStat method)

P

Pairwise (class in lingpy.compare)
pairwise_distances() (lingpy.lexstat.LexStat method)
pid() (in module lingpy.algorithm.misc)
pid_score() (lingpy.test.evaluate.EvalLXS method)
pind_score() (lingpy.test.evaluate.EvalLXS method)
pipd_score() (lingpy.test.evaluate.EvalLXS method)
pir_score() (lingpy.test.evaluate.EvalMSA method)
(lingpy.test.evaluate.EvalPSA method)
prog_align() (lingpy.compare.Multiple method)
prosodic_string() (in module lingpy.algorithm.misc)
prosodic_weights() (in module lingpy.algorithm.misc)

S

sca (in module lingpy.data)
Sequence (class in lingpy.sequence)
set_fscore() (lingpy.test.evaluate.EvalLXS method)
set_precision() (lingpy.test.evaluate.EvalLXS method)
set_recall() (lingpy.test.evaluate.EvalLXS method)
sp_score() (lingpy.test.evaluate.EvalMSA method)
(lingpy.test.evaluate.EvalPSA method)
squareform() (in module lingpy.algorithm.misc)
sum_of_pairs() (lingpy.compare.Multiple method)
swap_check() (lingpy.compare.Multiple method)

T

tokens2class() (in module lingpy.algorithm.misc)

U

upgma() (in module lingpy.algorithm.cluster)