Compute the percentage of identical rows (PIR) score.
mode : { 1, 2 }
Select between mode 1, where all sequences are compared with each other, and mode 2, where only whole alignments are compared.
score : float
The PIR score.
See also
lingpy.test.evaluate.EvalMSA.pir_score
Notes
The PIR score is the number of identical rows (sequences) in reference and test alignment divided by the total number of rows.
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