LingPy

This documentation is for version 2.0.dev, which is not released yet.

Cluster Algorithms (_cluster)

Functions

upgma(matrix, taxa[, distances]) Carry out a cluster analysis based on the UPGMA algorithm (Sokal1958).
neighbor(matrix, taxa[, distances]) Function clusters data according to the Neighbor-Joining algorithm (Saitou1987).
flat_upgma(threshold, matrix[, taxa, revert]) Carry out a flat cluster analysis based on the UPGMA algorithm (Sokal1958).
flat_cluster(method, threshold, matrix[, ...]) Carry out a flat cluster analysis based on the UPGMA algorithm.

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