Parameters : | mode : { 1, 2, 3 }
Indicate, which mode to compute. Select between:
- divide the number of common residue pairs in reference and test
alignment by the total number of residue pairs in the test
alignment (the traditional SP score described in
Thompson1999, also known as “precision” score in
applications of information retrieval),
- divide the number of common residue pairs in reference and test
alignment by the total number of residue pairs in the reference
alignment (also known as “recall” score in applications of
information retrieval),
- divide the number of common residue pairs in reference and test
alignment by the average number of residue pairs in reference
and test alignment.
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