Recent uploads

  • May 2, 2025 (v1)
    Presentation
    Open
    Bridging Gaps: A Pilot Program to Expand CHIS Training
    Williams, Jamia Nunn, Samantha Van Der Volgen, Jessi

    The Consumer Health Information Specialization (CHIS) Train-the-Trainer pilot project aimed to enhance public library staff's competency and confidence in teaching health literacy concepts and to increase the number of staff earning CHIS. The project included an environmental scan, curriculum, community of practice, and...

    Uploaded on November 6, 2026

    Part of NNLM Training Office

    0
    0
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/se_to_pe_fastq
    aryeelab

    topology-tools Setup Install cromwell On Macs Cromwell can be installed with brew install cromwell Otherwise you can download the Cromwell Jar from the releases page. Set up Google Cloud Tools for access to docker images: First download and install the Google Cloud CLI: https://cloud.google.com/sdk/docs/install-sdk Then authenticate...

    Uploaded on November 6, 2026

    Part of Dockstore

    18 more versions exist for this record

    676
    180
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/chunk_pe_fastq
    aryeelab

    topology-tools Setup Install cromwell On Macs Cromwell can be installed with brew install cromwell Otherwise you can download the Cromwell Jar from the releases page. Set up Google Cloud Tools for access to docker images: First download and install the Google Cloud CLI: https://cloud.google.com/sdk/docs/install-sdk Then authenticate...

    Uploaded on November 6, 2026

    Part of Dockstore

    17 more versions exist for this record

    588
    129
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/chunk_se_fastq
    aryeelab

    topology-tools Setup Install cromwell On Macs Cromwell can be installed with brew install cromwell Otherwise you can download the Cromwell Jar from the releases page. Set up Google Cloud Tools for access to docker images: First download and install the Google Cloud CLI: https://cloud.google.com/sdk/docs/install-sdk Then authenticate...

    Uploaded on November 6, 2026

    Part of Dockstore

    14 more versions exist for this record

    402
    115
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/download_url_to_file
    aryeelab

    topology-tools Setup Install cromwell On Macs Cromwell can be installed with brew install cromwell Otherwise you can download the Cromwell Jar from the releases page. Set up Google Cloud Tools for access to docker images: First download and install the Google Cloud CLI: https://cloud.google.com/sdk/docs/install-sdk Then authenticate...

    Uploaded on November 6, 2026

    Part of Dockstore

    14 more versions exist for this record

    398
    82
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/preprocess_rcmc
    aryeelab

    topology-tools Setup Install cromwell On Macs Cromwell can be installed with brew install cromwell Otherwise you can download the Cromwell Jar from the releases page. Set up Google Cloud Tools for access to docker images: First download and install the Google Cloud CLI: https://cloud.google.com/sdk/docs/install-sdk Then authenticate...

    Uploaded on November 6, 2026

    Part of Dockstore

    14 more versions exist for this record

    379
    80
  • November 6, 2026 (preprocess-hic/v1.1.1)
    Software
    Open
    github.com/aryeelab/topology-tools/preprocess_microc
    aryeelab

    Process microC data. Inspired in pipeline from: https://micro-c.readthedocs.io/en/latest/index.html

    Uploaded on November 6, 2026

    Part of Dockstore

    12 more versions exist for this record

    295
    58
  • November 6, 2026 (3.0)
    Dataset
    Open
    ChromoDB Source Data: Chromosome counts from the IAPT/IOPB chromosome data series
    Simon, Joan Bosch, Maria Blanché, Cèsar

    Version 3.0 (6 November 2026) is a corrective release that replaces v2.0, whose records file contained a row-alignment error. Version 2.0 should not be used. See README.md for details. This dataset contains 32,063 curated chromosome count records and 1,709 bibliographic references extracted from the IOPB and IAPT chromosome data series...

    Uploaded on November 6, 2026

    Part of ChromoDB: The Global Chromosome Number Project

    2 more versions exist for this record

    593
    551
  • November 6, 2026 (IlluminaGenotypingArray_develop)
    Software
    Open
    github.com/broadinstitute/warp/scANVI
    broadinstitute

    Pipeline for cell type label transfer using SCVI and SCANVI models. Integrates single-cell RNA (GEX) and (optionally) ATAC data with an annotated reference to transfer cell type labels via semi-supervised deep generative models. When no ATAC h5ad is provided, the pipeline auto-detects GEX-only mode and trains/annotates from the reference atlas...

    Uploaded on November 6, 2026

    Part of Dockstore

    170 more versions exist for this record

    6998
    1549
  • November 6, 2026 (IlluminaGenotypingArray_develop)
    Software
    Open
    github.com/broadinstitute/warp/TestscANVI
    broadinstitute

    Warp Analysis Research Pipelines The Warp Analysis Research Pipelines (WARP) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators. WARP provides robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia...

    Uploaded on November 6, 2026

    Part of Dockstore

    138 more versions exist for this record

    2223
    411
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