Open repository for EU-funded research outputs from Horizon Europe, Euratom, and earlier Framework Programmes.
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February 19, 2026 (v3.2.1-dockstore)SoftwareOpen
family.wdl inputs and outputs family.wdl inputs and outputs DAG (simplified) Inputs Family Struct Sample Struct Outputs Alignments, Coverage, and QC Small Variants (<50 bp) Structural Variants (≥50 bp) Tandem Repeat Genotyping Variant Phasing Variant Calling in Dark Regions 5mCpG Methylation Calling PGx Typing Tertiary...
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February 19, 2026 (v3.2.1-dockstore)SoftwareOpen
singleton.wdl inputs and outputs singleton.wdl inputs and outputs DAG (simplified) Inputs Outputs Alignments, Coverage, and QC Small Variants (<50 bp) Structural Variants (≥50 bp) Tandem Repeat Genotyping Variant Phasing Variant Calling in Dark Regions 5mCpG Methylation Calling PGx Typing Tertiary Analysis DAG...
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February 18, 2026 (v1)DatasetOpen
The Pf8 data release includes 33,325 parasite samples collected in 34 different countries in Africa, Asia, South America and Oceania. From these, 24,409 are high-quality samples with complete metadata. In total, we identified more than 12 million variant positions (SNPs and indels). This record includes metadata and drug-resistance inference...
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February 19, 2026 (v1.0.0)SoftwareOpen
Open source software of the project Paleotwin, funded in the context of Spoke 4 of project CHANGES
Uploaded on February 19, 2026
Part of Project CHANGES - Cultural Heritage Active Innovation for Next-Gen Sustainable Society
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February 19, 2026 (v0.1.2)SoftwareOpen
Perform background subtraction, nuclear segmentation, feature quantification, cellular phenotyping, spatial analysis, and interactive visualization of registered TMA core multiplex tissue images
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February 19, 2026 (v0.4)SoftwareOpen
Assemble long reads with Flye, then view assembly statistics and assembly graph
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February 19, 2026 (v1.0.20)SoftwareOpen
The Interstellar Mapping and Acceleration Probe (IMAP) is a project aimed at studying the interstellar medium and investigating the acceleration mechanisms of particles within our galaxy. IMAP utilizes cutting-edge technology and advanced instrumentation to gather valuable data and expand our understanding of space. The Science Data Center...
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February 19, 2026 (v0.6.4)SoftwareOpen
Complete preprocessing pipeline for 10X Genomics v3 single-cell RNA-seq data. Aligns raw FASTQ files using STARsolo, performs cell calling and quality filtering with DropletUtils, and formats outputs for seamless import into Seurat/Scanpy (Read10X function).
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February 19, 2026 (v0.6.4)SoftwareOpen
Comprehensive preprocessing for 10X Genomics CellPlex multiplexed single-cell RNA-seq data. Processes Cell Multiplexing Oligo (CMO) FASTQ files with CITE-seq-Count including required CellPlex-specific translation steps. Simultaneously processes gene expression FASTQ files with STARsolo and DropletUtils for alignment and cell filtering, and...
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February 19, 2026 (v0.2)SoftwareOpen
Workflow to predict EI mass spectra using QCxMS starting from a single SDF file, containing the 3D coordinates of all atoms in the molecule. These files can typically be obtained from PubChem.
