Published April 2, 2018
| Version 3.0.0
Dataset
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Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"
- 1. Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia
Description
Supplementary data for A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich. Versatile genome assembly evaluation with QUAST-LG. ISMB 2018 PROCEEDINGS (Bioinformatics journal)
Reference genomes of
- Saccharomyces cerevisiae (yeast) version R64-1-1
- Caenorhabditis elegans (worm) version WBcel235
- Drosophila melanogaster (fruit fly) version BDGP6
And de novo genome assemblies of
- Yeast_PB (S. cerevisiae, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)
- Yeast_NP (S. cerevisiae, genome size: 12.1 Mb): Canu, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and Oxford Nanopore)
- Worm_PB (C. elegans, genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)
- Fly_MP (D. melanogaster, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)
- Human_MP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)
- Human_NP (H. sapiens, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopore)
Each pack (items 1-4) is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to de novo assemblies of the human datasets please visit http://cab.spbu.ru/software/quast-lg/ or write to quast.support@cab.spbu.ru.
Files
Files
(2.3 GB)
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md5:96014f288660d4c3ecbd249fb3ae0ebc
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30.3 MB | Download |
md5:f4b1e3100ae1254dc9bd80f79b2545ae
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41.8 MB | Download |
md5:507c6e8c6388032fd4ba6d714f24255f
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283.6 MB | Download |
md5:0199249addb8276c09a759118669c5d3
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874.1 MB | Download |
md5:bb75d730fec1992b3b99505e70d61c38
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874.9 MB | Download |
md5:c654c7b8205baeb752e1256364c0eaf7
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3.8 MB | Download |
md5:579b8bb6fc88023d90f7ccc6b135104f
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182.6 MB | Download |
md5:61503101061704dbb4c1826b415224cd
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18.5 MB | Download |
md5:d486cbc79a1df206b21d78fdeef2bc0a
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22.3 MB | Download |
Additional details
Related works
- Is documented by
- http://cab.spbu.ru/software/quast-lg/ (URL)